Gene Co-Expression Analysis

Gene Co-Expression Analysis

Select Dataset

Display Labels As:

GeneID GeneName

Number of Clusters (cut tree):

Matrix Type:

Full Matrix

Reduced Matrix

Top N Genes

Submatrix Size

Top N Genes

Filter Mode:

None

Inside Range

Outside Range

Keep Only Correlations Between:

Keep Only Correlations Outside:

Highlight a Category (default: Top 5 shown):

Welcome to Gene Co-Expression Analysis

Features:

Interactive heatmap exploration with zoom, brush, and tooltip support
Gene search with GeneID or GeneName toggle
Sub-heatmap for selected gene regions
DotPlot visualization for gene expression
Advanced filtering: top genes and correlation range selection
Export of selected gene table and heatmap images

Available Datasets (NE genes only):

Cauline: NE gene-specific co-expression data from cauline tissue
Flower: NE gene-specific co-expression data from flower tissue
Leaf: NE gene-specific co-expression data from leaf tissue
Root: NE gene-specific co-expression data from root tissue
Shoot: NE gene-specific co-expression data from shoot tissue
Silique: NE gene-specific co-expression data from silique tissue
Stem: NE gene-specific co-expression data from stem tissue

Getting Started:

Navigate to the 'Heatmap' tab
Select a dataset focused on NE genes
Choose matrix size or top N genes if needed
Click 'Generate Heatmap' to visualize correlations
Use features: zoom, search, subheatmap, DotPlot